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1

Mitochondrial origins of fractional control in regulated cell death

Santos, Luís C., Vogel, Robert, Chipuk, Jerry E., Birtwistle, Marc R., Stolovitzky, Gustavo, Meyer, Pablo

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.87 MB

english, 2019

2

Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm

Wunsch, Benjamin H., Smith, Joshua T., Gifford, Stacey M., Wang, Chao, Brink, Markus, Bruce, Robert L., Austin, Robert H., Stolovitzky, Gustavo, Astier, Yann

Journal:

Nature Nanotechnology

Year:

2016

Language:

english

File:

PDF, 2.78 MB

english, 2016

3

On-Chip Liquid Biopsy: Progress in Isolation of Exosomes for Early Diagnosis of Cancer

Cheol Kim, Sung, Dogra, Navneet, Wunsch, Benjamin H., Smith, Joshua T., Gifford, Stacey M., Stolovitzky, Gustavo, Hu, Huan, Meyer, Pablo

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

4

A simple model of chaotic advection and scattering

Stolovitzky, Gustavo, Kaper, Tasso J., Sirovich, Lawrence

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

1995

Language:

english

File:

PDF, 2.75 MB

english, 1995

5

Intermittency, the second-order structure function, and the turbulent energy-dissipation rate

Stolovitzky, Gustavo, Sreenivasan, K. R.

Journal:

Physical Review E

Year:

1995

Language:

english

File:

PDF, 133 KB

english, 1995

6

Faithfulness-boost effect: Loyal teammate selection correlates with skill acquisition improvement in online games

Landfried, Gustavo, Fernández Slezak, Diego, Mocskos, Esteban, Stolovitzky, Gustavo

Journal:

Year:

2019

Language:

english

File:

PDF, 5.74 MB

english, 2019

7

COSIFER: a python package for the consensus inference of molecular interaction networks

Manica, Matteo, Bunne, Charlotte, Mathis, Roland, Cadow, Joris, Ahsen, Mehmet Eren, Stolovitzky, Gustavo A, MartÃnez, MarÃa RodrÃguez, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 225 KB

2020

8

Feynman's Ratchet and Pawl

Marcelo O. Magnasco, Gustavo Stolovitzky

Journal:

Journal of Statistical Physics

Year:

1998

Language:

english

File:

PDF, 915 KB

english, 1998

9

When the Optimal Is Not the Best: Parameter Estimation in Complex Biological Models

Fernández Slezak, Diego, Suárez, Cecilia, Cecchi, Guillermo A., Marshall, Guillermo, Stolovitzky, Gustavo, Flower, Darren R.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.13 MB

english, 2010

10

Dialogue on Reverse-Engineering Assessment and Methods : The DREAM of High-Throughput Pathway Inference

GUSTAVO STOLOVITZKY, DON MONROE, ANDREA CALIFANO

Journal:

Annals of the New York Academy of Sciences

Year:

2007

Language:

english

File:

PDF, 171 KB

english, 2007

11

Base-By-Base Ratcheting of Single Stranded DNA through a Solid-State Nanopore

Luan, Binquan, Martyna, Glenn, Stolovitzky, Gustavo, Peng, Hongbo, Polonsky, Stas, Rossnagel, Steve

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 35 KB

english, 2010

12

Reverse engineering of regulatory networks in human B cells

Basso, Katia, Margolin, Adam A, Stolovitzky, Gustavo, Klein, Ulf, Dalla-Favera, Riccardo, Califano, Andrea

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 828 KB

english, 2005

13

Fabricatable nanopore sensors with an atomic thickness

Luan, Binquan, Bai, Jingwei, Stolovitzky, Gustavo

Journal:

Applied Physics Letters

Year:

2013

Language:

english

File:

PDF, 886 KB

english, 2013

14

[IEEE 2018 IEEE 12th International Conference on Semantic Computing (ICSC) - Laguna Hills, CA (2018.1.31-2018.2.2)] 2018 IEEE 12th International Conference on Semantic Computing (ICSC) - Predictive Linguistic Markers of Suicidality in Poets

Agurto, Carla, Pataranutaporn, Pat, Eyigoz, Elif K., Stolovitzky, Gustavo, Cecchi, Guillermo

Year:

2018

Language:

english

File:

PDF, 418 KB

english, 2018

15

R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics

Ahsen, Mehmet Eren, Vogel, Robert, Stolovitzky, Gustavo A.

Journal:

Journal of Computational Biology

Year:

2020

File:

PDF, 264 KB

2020

16

Ising Model of Cardiac Thin Filament Activation with Nearest-Neighbor Cooperative Interactions

Rice, John Jeremy, Stolovitzky, Gustavo, Tu, Yuhai, de Tombe, Pieter P.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 263 KB

english, 2003

17

Tribological Effects on DNA Translocation in a Nanochannel Coated with a Self-Assembled Monolayer

Luan, Binquan, Afzali, Ali, Harrer, Stefan, Peng, Hongbo, Waggoner, Philip, Polonsky, Stas, Stolovitzky, Gustavo, Martyna, Glenn

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 2.39 MB

english, 2010

18

ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding

Adam A Margolin, Teresa Palomero, Adolfo A Ferrando, Andrea Califano, Gustavo Stolovitzky

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 186 KB

english, 2007

19

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue

Califano, Andrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Year:

2012

Language:

english

File:

PDF, 30 KB

english, 2012

20

ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Margolin, Adam, Palomero, Teresa, Sumazin, Pavel, Califano, Andrea, Ferrando, Adolfo, Stolovitzky, Gustavo

Journal:

Nature Precedings

Year:

2007

File:

PDF, 878 KB

2007

21

The Information Coded in the Yeast Response Elements Accounts for Most of the Topological Properties of Its Transcriptional Regulation Network

Balcan, Duygu, Kabakçıoğlu, Alkan, Mungan, Muhittin, Erzan, Ayşe, Stolovitzky, Gustavo

Journal:

Year:

2007

Language:

english

File:

PDF, 334 KB

english, 2007

22

Deterministic Lateral Displacement: Challenges and Perspectives

Hochstetter, Axel, Vernekar, Rohan, Austin, Robert H., Becker, Holger, Beech, Jason P., Fedosov, Dmitry A., Gompper, Gerhard, Kim, Sung-Cheol, Smith, Joshua T., Stolovitzky, Gustavo, Tegenfeldt, Jonas

Journal:

Year:

2020

File:

PDF, 1.74 MB

2020

23

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2018)] Biocomputing 2018 - Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology

Chen, Xintong, Houten, Sander, Allette, Kimaada, Sebra, Robert P., Stolovitzky, Gustavo, Losic, Bojan

Language:

english

File:

PDF, 1.92 MB

english

24

Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors

Poplawski, Nikodem J., Shirinifard, Abbas, Agero, Ubirajara, Gens, J. Scott, Swat, Maciej, Glazier, James A., Stolovitzky, Gustavo

Journal:

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

25

Characterization of stationary distributions using conditional expectations

Gustavo Stolovitzky, Emily S.C. Ching

Journal:

Physics Letters A

Year:

1999

Language:

english

File:

PDF, 67 KB

english, 1999

26

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

Adam A Margolin, Ilya Nemenman, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, Andrea Califano

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 797 KB

english, 2006

27

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue

Califano, Andrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

28

Statistical Dependence of Inertial Range Properties on Large Scales in a High-Reynolds-Number Shear Flow

Sreenivasan, Katepalli R., Stolovitzky, Gustavo

Journal:

Physical Review Letters

Year:

1996

Language:

english

File:

PDF, 139 KB

english, 1996

29

Crowdsourcing biomedical research: leveraging communities as innovation engines

Saez-Rodriguez, Julio, Costello, James C., Friend, Stephen H., Kellen, Michael R., Mangravite, Lara, Meyer, Pablo, Norman, Thea, Stolovitzky, Gustavo

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 659 KB

english, 2016

30

Gene selection in microarray data: the elephant, the blind men and our algorithms

Gustavo Stolovitzky

Journal:

Current Opinion in Structural Biology

Year:

2003

Language:

english

File:

PDF, 237 KB

english, 2003

31

Motif-based construction of a functional map for mammalian olfactory receptors

Agatha H. Liu, Xinmin Zhang, Gustavo A. Stolovitzky, Andrea Califano, Stuart J. Firestein

Journal:

Year:

2003

Language:

english

File:

PDF, 531 KB

english, 2003

32

Controlling Motion of DNA in a Nanochannel with Transverse Alternating-Electric-Voltages

Luan, Binquan, Wang, Chao, Royyuru, Ajay, Stolovitzky, Gustavo

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 75 KB

english, 2014

33

Systematic and Fully Automated Identification of Protein Sequence Patterns

Hart, Reece K., Royyuru, Ajay K., Stolovitzky, Gustavo, Califano, Andrea

Journal:

Journal of Computational Biology

Year:

2000

Language:

english

File:

PDF, 1.11 MB

english, 2000

34

Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue

Califano, AnDrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Year:

2015

Language:

english

File:

PDF, 37 KB

english, 2015

35

Controlling the motion of DNA in a nanochannel with transversal alternating electric voltages

Luan, Binquan, Wang, Chao, Royyuru, Ajay, Stolovitzky, Gustavo

Journal:

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

36

Accurate and Reliable Cancer Classification Based on Probabilistic Inference of Pathway Activity

Su, Junjie, Yoon, Byung-Jun, Dougherty, Edward R., Stolovitzky, Gustavo

Journal:

Year:

2009

Language:

english

File:

PDF, 698 KB

english, 2009

37

Preface

Gustavo Stolovitzky, Andrea Califano

Journal:

Annals of the New York Academy of Sciences

Year:

2007

Language:

english

File:

PDF, 39 KB

english, 2007

38

RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue

Califano, Andrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Year:

2014

Language:

english

File:

PDF, 36 KB

english, 2014

39

Toward better benchmarking: challenge-based methods assessment in cancer genomics

Boutros, Paul C, Margolin, Adam A, Stuart, Joshua M, Califano, Andrea, Stolovitzky, Gustavo

Journal:

Year:

2014

Language:

english

File:

PDF, 543 KB

english, 2014

40

Coherent Structures and Conditional Statistics in Inhomogeneous Turbulent Mixing

Stolovitzky, Gustavo, Aider, Jean Luc, Wesfreid, Jose Eduardo

Journal:

Physical Review Letters

Year:

1997

Language:

english

File:

PDF, 257 KB

english, 1997

41

Dynamics of collective performance in collaboration networks

Amelkin, Victor, Askarisichani, Omid, Kim, Young Ji, Malone, Thomas W., Singh, Ambuj K., Stolovitzky, Gustavo

Journal:

Year:

2018

Language:

english

File:

PDF, 6.57 MB

english, 2018

42

Comparison of Amersham and Agilent Microarray Technologies Through Quantitative Noise Analysis

Held, G.A., Duggar, Keith, Stolovitzky, Gustavo

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 416 KB

english, 2006

43

A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae

Zhu, Jingchun, Jambhekar, Ashwini, Sarver, Aaron, DeRisi, Joseph, Stolovitzky, Gustavo

Journal:

Year:

2006

Language:

english

File:

PDF, 381 KB

english, 2006

44

Characterizing and Controlling the Motion of ssDNA in a Solid-State Nanopore

Luan, Binquan, Martyna, Glenn, Stolovitzky, Gustavo

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

45

Efficiency of DNA Replication in the Polymerase Chain Reaction

Gustavo Stolovitzky and Guillermo Cecchi

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.02 MB

english, 1996

46

Broken flow symmetry explains the dynamics of small particles in deterministic lateral displacement arrays

Kim, Sung-Cheol, Wunsch, Benjamin H., Hu, Huan, Smith, Joshua T., Austin, Robert H., Stolovitzky, Gustavo

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 7.84 MB

english, 2017

47

Nanopore in metal-dielectric sandwich for DNA position control

Polonsky, Stas, Rossnagel, Steve, Stolovitzky, Gustavo

Journal:

Applied Physics Letters

Year:

2007

Language:

english

File:

PDF, 536 KB

english, 2007

48

Regulating the Transport of DNA through Biofriendly Nanochannels in a Thin Solid Membrane

Wang, Deqiang, Harrer, Stefan, Luan, Binquan, Stolovitzky, Gustavo, Peng, Hongbo, Afzali-Ardakani, Ali

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

49

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Systematic and automated discovery of patterns in PROSITE families

Hart, Reece, Royyuru, Ajay K., Stolovitzky, Gustavo, Califano, Andrea

Year:

2000

Language:

english

File:

PDF, 743 KB

english, 2000

50

Reverse Engineering Time Discrete Finite Dynamical Systems: A Feasible Undertaking?

Delgado-Eckert, Edgar, Stolovitzky, Gustavo

Journal:

Year:

2009

Language:

english

File:

PDF, 289 KB

english, 2009

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